Proof.
Part (1) follows from the injectivity of the base change map discussed in Section 62.3. (This argument works as long as S' \to S is surjective.)
Let \alpha ' be as in (2). Denote \alpha '' = \text{pr}_1^*\alpha ' = \text{pr}_2^*\alpha ' the common value.
Let (X/S)^{(r)} be the set of x \in X with \text{trdeg}_{\kappa (f(x))}(\kappa (x)) = r and similarly define (X'/S')^{(r)} and (X''/S'')^{(r)} Taking coefficients, we may think of \alpha ' and \alpha '' as functions \alpha ' : (X'/S')^{(r)} \to \mathbf{Z} and \alpha '' : (X''/S'')^{(r)} \to \mathbf{Z}. Given a function
\varphi : (X/S)^{(r)} \to \mathbf{Z}
we define g^*\varphi : (X'/S')^{(r)} \to \mathbf{Z} by analogy with our base change operation. Namely, say x' \in (X'/S')^{(r)} maps to x \in X, s' \in S', and s \in Z. Denote Z' \subset X'_{s'} and Z \subset X_ s the integral closed subschemes with generic points x' and x. Note that \dim (Z') = r. If \dim (Z) < r, then we set (g^*\varphi )(x') = 0. If \dim (Z) = r, then Z' is an irreducible component of Z_{s'} and hence has a multiplicity m_{Z', Z_{s'}}. Call this m(x', g). Then we define
(g^*\varphi )(x') = m(x', g) \varphi (x)
Note that the coefficients m(x', g) are always positive integers (see for example Lemma 62.3.1). We similarly have base change maps
\text{pr}_1^*, \text{pr}_2^* : \text{Map}((X'/S')^{(r)}, \mathbf{Z}) \longrightarrow \text{Map}((X''/S'')^{(r)}, \mathbf{Z})
It follows from the associativity of base change that we have \text{pr}_1^* \circ g^* = \text{pr}_2^* \circ g^* (small detail omitted). To be explicitly, in terms of the maps of sets this equality just means that for x'' \in (X''/S'')^{(r)} we have
m(x'', \text{pr}_1) m(\text{pr}_1(x''), g) = m(x'', \text{pr}_2) m(\text{pr}_2(x''), g)
provided that \text{pr}_1(x'') and \text{pr}_2(x'') are in (X''/S'')^{(r)}. By Lemma 62.5.8 and an elementary argument1 using the previous displayed equation, it follows that there exists a unique map
\alpha : (X/S)^{(r)} \to \mathbf{Q}
such that g^*\alpha = \alpha '. To finish the proof it suffices to show that \alpha has integer values (small detail omitted: one needs to see that \alpha determines a locally finite sum on each fibre which follows from the corresponding fact for \alpha '). Given any x \in (X/S)^{(r)} with image s \in S we can pick a point s' \in S' such that \kappa (s')/\kappa (s) is separable. Then we may choose x' \in (X'/S')^{(r)} mapping to s and x and we see that m(x', g) = 1 because Z_{s'} is reduced in this case. Whence \alpha (x) = \alpha '(x') is an integer.
\square
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