Proof.
Part (1) follows from a combination of Lemmas 103.6.1 and 103.7.2. The proof of (2) is analogous to the proof of Lemma 103.6.3. Let \mathcal{F} of a sheaf of \mathcal{O}_\mathcal {X}-modules on \mathcal{X}_{fppf}.
First, suppose there is a morphism a : \mathcal{U} \to \mathcal{X} which is surjective, flat, locally of finite presentation, quasi-compact, and quasi-separated such that a^*\mathcal{F} is locally quasi-coherent and has the flat base change property. Then there is an exact sequence
0 \to \mathcal{F} \to a_*a^*\mathcal{F} \to b_*b^*\mathcal{F}
where b is the morphism b : \mathcal{U} \times _\mathcal {X} \mathcal{U} \to \mathcal{X}, see Sheaves on Stacks, Proposition 96.19.7 and Lemma 96.19.10. Moreover, the pullback b^*\mathcal{F} is the pullback of a^*\mathcal{F} via one of the projection morphisms, hence is locally quasi-coherent and has the flat base change property, see Proposition 103.8.1. The modules a_*a^*\mathcal{F} and b_*b^*\mathcal{F} are locally quasi-coherent and have the flat base change property by Proposition 103.8.1. We conclude that \mathcal{F} is locally quasi-coherent and has the flat base change property by Proposition 103.8.1.
Choose a scheme U and a surjective smooth morphism x : U \to \mathcal{X}. By part (1) it suffices to show that x^*\mathcal{F} is locally quasi-coherent and has the flat base change property. Again by part (1) it suffices to do this (Zariski) locally on U, hence we may assume that U is affine. By Morphisms of Stacks, Lemma 101.27.14 there exists an fppf covering \{ a_ i : U_ i \to U\} such that each x \circ a_ i factors through some f_ j. Hence the module a_ i^*\mathcal{F} on (\mathit{Sch}/U_ i)_{fppf} is locally quasi-coherent and has the flat base change property. After refining the covering we may assume \{ U_ i \to U\} _{i = 1, \ldots , n} is a standard fppf covering. Then x^*\mathcal{F} is an fppf module on (\mathit{Sch}/U)_{fppf} whose pullback by the morphism a : U_1 \amalg \ldots \amalg U_ n \to U is locally quasi-coherent and has the flat base change property. Hence by the previous paragraph we see that x^*\mathcal{F} is locally quasi-coherent and has the flat base change property as desired.
\square
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